#Singular matrix how to#

R = gufunc(a, b, signature=signature, extobj=extobj)ДЇile '/home/zhangt8/.local/lib/python2.7/site-packages/numpy/linalg/linalg. Return np.linalg.solve(xtx, xty).reshape((1, p))ДЇile '/home/zhangt8/.local/lib/python2.7/site-packages/numpy/linalg/linalg.py', line 384, in solve Self.est = self.block_values_to_est(xty, xtx)ДЇile '/gpfs/gsfs7/users/zhangt8/NF_eQTL_ALL/LDSC/software/ldsc/ldscore/jackknife.py', line 386, in block_values_to_est Jknife = jk.LstsqJackknifeFast(x, y, n_blocks)ДЇile '/gpfs/gsfs7/users/zhangt8/NF_eQTL_ALL/LDSC/software/ldsc/ldscore/jackknife.py', line 309, in init Slow=slow, step1_ii=step1_ii, old_weights=old_weights)ДЇile '/gpfs/gsfs7/users/zhangt8/NF_eQTL_ALL/LDSC/software/ldsc/ldscore/regressions.py', line 208, in init Twostep=args.two_step, old_weights=old_weights)ДЇile '/gpfs/gsfs7/users/zhangt8/NF_eQTL_ALL/LDSC/software/ldsc/ldscore/regressions.py', line 346, in init Removed 9 SNPs with chi^2 > 80 (976508 SNPs remain)ДЇile '/data/zhangt8/NF_eQTL_ALL/LDSC/software/ldsc/ldsc.py', line 644, inДЇile '/gpfs/gsfs7/users/zhangt8/NF_eQTL_ALL/LDSC/software/ldsc/ldscore/sumstats.py', line 359, in estimate_h2 Read regression weight LD Scores for 1071448 SNPs.ДЄfter merging with reference panel LD, 983810 SNPs remain.ДЄfter merging with regression SNP LD, 976517 SNPs remain. Reading regression weight LD Score from /data/zhangt8/NF_eQTL_ALL/LDSC/software/1000G_Phase3_EAS_weights_hm3_no_MHC/3_noMHC. Removing partitioned LD Scores with zero variance. Read reference panel LD Scores for 1108605 SNPs. Reading reference panel LD Score from /data/zhangt8/NSLC/GWAS/LDSC/LD/MELA. Read summary statistics for 1173749 SNPs. Reading summary statistics from /data/zhangt8/NSLC/GWAS/Meta/. Input: 2, 32, 12, 0, 0, 0, 23, 6, 9 Output: Singular Matrix Explanation: The determinant of the given matrix is zero. A matrix is said to be a singular matrix if its determinant is equal to zero.

#Singular matrix how to#

w-ld-chr /data/zhangt8/NF_eQTL_ALL/LDSC/software/1000G_Phase3_EAS_weights_hm3_no_MHC/3_noMHC.Д«eginning analysis at Mon Jul 8 09:36:20 2019 In this article, we will how to check whether a given matrix is a singular matrix or not in Python.

frqfile-chr /data/zhangt8/NF_eQTL_ALL/LDSC/software/1000G_Phase3_EAS_frq/. ref-ld-chr /data/zhangt8/NSLC/GWAS/LDSC/LD/MELA.

Broad Institute of MIT and Harvard / MIT Department of Mathematics.

Can you help to check what's the reason for this kind of error? Thanks.

Hello, I tried to use the LDSC for Partitioned Heritability from Continuous Annotations, but we got the following error information.